Comments (2)
OK I could finally install it:
conda create -p 00_software/conda-syri -y
conda activate 00_software/conda-syri
conda install conda-forge::pulp -y
conda install conda-forge::python-igraph -y
conda install conda-forge/label/python_rc::_python_rc -y
conda install python=3.9.0 -y
conda install -c bioconda syri -y
from syri.
Good that it worked. I assume that something changed with how pulp is installed with conda. Thanks a lot for sharing the solution, I am sure it would be helpful to others.
As syri got installed I will close the issue.
from syri.
Related Issues (20)
- complicated region not detected correctly HOT 2
- About InvOut and Inv breakpoints HOT 3
- Huge chromosome problem HOT 6
- keyerror HOT 3
- Request for Guidance on Converting NOTALs to Presence in Syri Outputs HOT 3
- translocated to different chromosomes HOT 3
- Consult DUP/INVDP for details HOT 2
- microhomology at ends of insertions HOT 4
- INV vs INVDUP HOT 2
- ERROR syri:201 - Length of query sequence of Chr1 is less than the maximum coordinate of its aligned regions HOT 7
- Wrong CIGAR string HOT 1
- IndexError: list index out of range syri HOT 9
- SYRI:IndexError: list index out of range HOT 1
- how to merge SyRI vcfs HOT 2
- Questions about 'NOTAL' HOT 2
- Question about output
- Support for promer HOT 3
- CIGAR string starting with non-matching base HOT 1
- Overlapping INV and SYN HOT 3
- A very strange result of syri HOT 1
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from syri.