Comments (1)
Hi Feng,
If these chromosomes are indeed present and have homologous alignments then, this error should not happen.
Have you checked whether there are directed alignments between the homologous genomes? Maybe you can try https://github.com/schneebergerlab/fixchr to first find homologous chromosomes and also to check how the genomes are aligned (using the dotplot tool).
from syri.
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from syri.