sc13-bioinf Goto Github PK

adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

adapterremovalfixprefix

Fixes adapter removal prefixes to make sure no clashing read names are in the output.

anchor

Anchor Modeler is a database modeling tool for creating database models that handles temporalization using the sixth normal form.

ancientcnv

Call CNV from ancient DNA sequence data

bio.io.vcf

Library for working with VCF (Variant Call Format) data

bioconda-recipes

Conda recipes for the bioconda channel.

challenge

charliecloud

Lightweight user-defined software stacks for high-performance computing.

circularmapper

A method to improve mappings on circular genomes, using the BWA mapper

clipandmerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

clj-jupyter

A Clojure Kernel for Jupyter Notebooks

clj-jupyter-player

clj-pdf

PDF generation library for Clojure

clojupyter

a Jupyter kernel for Clojure

clojure.jdbc

JDBC library for Clojure

codox

Clojure documentation tool

damageprofiler

A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

dedup

A merged read deduplication tool capable to perform merged read deduplication on single end data.

denovogear

A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)

dryclean

Irons out wrinkles in noisy coverage data using robust PCA

eager

A fully reproducible and state of the art ancient DNA analysis pipeline.

eager-cli

The EAGER Command Line Component

eager-gui

The EAGER Pipeline

eager-lib

The Communication Library used for communication between EAGER-GUI and CLI components.

extraction-graph

A nodejs module to manage PDF stored as a neo4j graph

grammars-v4

Grammars written for ANTLR v4; expectation that the grammars are free of actions.

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

incanter

Clojure-based, R-like statistical computing and graphics environment for the JVM

jloda

JLODA - Java library of data structures and algorithms

json-in-neo4j

A nodejs module to store json in a neo4j graph