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allelefinder

AlleleFinder is a tool for identifying allele genes from polyploid genome.

allhic_adjuster

A toolset for adjusting ALLHiC assembly

allhic_components

Some components that speed up and reduce resource cost for original ALLHiC

allhic_evaluate_data_generators

Some scripts for generating simulate data for evaluating ALLHiC

barcodephp

A PHP library for generating EAN 8/13 barcode

bioplotz

A plot package for bioinformatics

bioscripts

several scripts for bioinformatics

boring_codes

Coding when boring.

catg

CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for assembly.

cufscripts

Some scripts for visualizing Papaya SV

kite

kpart

kPart is a kmer-based tool for partition contigs into groups with parents, previous name is TrioCC

mate

MATE (Meaningful Allelic-haploType dEtector) is a tool for identifying allelic haplotype associate with phenotypes.

mhspf

MHSPF(MicroHomologous Sequences Pairs Finder) is a simple tool for searching MHS pairs from genome

ngc_wii_game_id

A simple tool for reading and writing game name and game id for Wii (wbfs/iso) and NGC(gcm/iso)

panmarker

PanMarker is a tool for identifying variants associate with phenotypes from pan-genome.

panpara

PanPara is a tool for identifying paralog genes with pan-genome.

png2ico

The png2ico is a simple tool for converting png file to ico file or ico file to png file.

popcnv

popCNV is a tool for calculating copy number of genes and get genes selected by humans

sc-zhang

t2tools

T2Tools is a toolset contains several tools for T2T assembly, and it is under development.

text2folder

A simple tools which can create multi folders with a list file

wbf2wbfs

A simple tool for converting Wii games from wbf format to wbfs, batch convert support.