sarvarip Goto Github PK

advancedstatisticallearning

Hidden Markov Models, Viterbi algorithm, Maximum likelihood Markov Chain, Expectation-Maximization with full k-means initialization, Factor Analysis, EM for PPCA with missing values

ai

Traditional AI Algorithms

bacterialcellmodel

Stochastic whole cell model with detailed description of resource-limited translation

computationalneuroscience

Integrate and Fire model, Ring network, BCM rule, Spike time dependent plasticity (STDP), Perceptron and Temporal Difference Learning

deeplearning

Image Recognition, Natural Language Processing and Time Series Analysis: image augmentation, transfer learning, word embedding, automated text generation, tensorflow, pytorch, gpu

dnassembly

Linear greedy method for DNA assembly that repeatedly picks the edge with the largest value in the overlap graph and then merges the two nodes that had that edge between them

imageregistration

Using simulated annealing and linear transformation to register two images

java

machinelearningpython

Self-scaling neural network scripts with stratified cross-validation for both parameter search and model evaluation (parallelized); Gradient Boosting, model stacking, target encoding

machinelearningr

Partial Least Squares Regression, Regularized binomial regression, Logistic and linear regression scripts using stratified cross-validation for both parameter search and model evaluation; SMOTE oversampling, glmnet, pls

methylation

optimization

Unconstrained optimization techniques: Gradient, Newton, Polak-Ribiere, BFGS methods and simplex method for optimization without the gradient

patternrecognition

PCA, LDA, ensemble models, distance metrics, k nearest neighbour, k-means, kMkNN algorithm, Neural Networks

probabilisticmethods

Gaussian bases regression, Expectation-Maximization and Naive Bayes Classifier

protein-prediction-pipeline

An open-source machine learning pipeline tuned for discovering small peptides with therapeutic activities

quantitativefinance

Portfolio analysis code

stringmatching

Some algorithms for exact string matching and related topics, dynamic programming