Name: Saptarshi Pyne
Type: User
Company: Indian Institute of Science Education and Research Kolkata
Bio: Assistant Prof., Computational and Data Sciences, IISER Kolkata, India. Probabilistic and Causal Reasoning, Probabilistic Graphical Models.
Twitter: saptarshipyne01
Location: Kolkata, India
Blog: https://sap01.github.io
Saptarshi Pyne's Projects
Make Tutorial Files for CS242 2019 at IITG
CSL4030 Data Engineering
ARTIVA Benchmarking
Get the results of the ARTIVA algo so that they can be comparatively studied with those of the TGS-Lite (TL) algo
Style Guidelines for Programming with Various Programming Languages
Get the results of the EDISON algos so that they can be comparatively studied with those of the TGS-Lite (TL) algo
Estimating TF activity using NCA+LASSO.
Generate synthetic time-varying gene regulatory networks and synthetic time-series gene expression data using R package EDISON
Course Name: Intelligent Systems and Interfaces
International Conference on Bioinformatics 2018, JNU, New Delhi, India. http://incob2018.org/
Johns Hopkins University's Data Science Specialization
A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)
How to make a good academic poster
Project Respiratory Viral DREAM Challenge
My CV/resume in LaTeX.
Website of Saptarshi Pyne (Sap)
Test project
Learning git and Git and GitHub
Test GENIE3 on various datasets
Supplementary files for testing R package 'GENIE3'
Time-varying Gene regulatory networks with Shortlisted candidate regulators
Source code for the TGS-2 Algorithm
TGS Benchmarking
TGS-Lite: The 'Lite' version (less memory consuming version) of the TGS algorithm.
Supplementary Files for the TGS-Lite Paper
A Variant of the TGS Algorithm with Time-varying Shortlists of Candidate Regulators