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Saptarshi Pyne's Projects

artiva-tl icon artiva-tl

Get the results of the ARTIVA algo so that they can be comparatively studied with those of the TGS-Lite (TL) algo

edison-tl icon edison-tl

Get the results of the EDISON algos so that they can be comparatively studied with those of the TGS-Lite (TL) algo

genedi icon genedi

Generate synthetic time-varying gene regulatory networks and synthetic time-series gene expression data using R package EDISON

incob2018 icon incob2018

International Conference on Bioinformatics 2018, JNU, New Delhi, India. http://incob2018.org/

jhudss icon jhudss

Johns Hopkins University's Data Science Specialization

merlin-p icon merlin-p

A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)

projrvdc icon projrvdc

Project Respiratory Viral DREAM Challenge

tgs icon tgs

Time-varying Gene regulatory networks with Shortlisted candidate regulators

tgs-2 icon tgs-2

Source code for the TGS-2 Algorithm

tgs-lite icon tgs-lite

TGS-Lite: The 'Lite' version (less memory consuming version) of the TGS algorithm.

tgs-t icon tgs-t

A Variant of the TGS Algorithm with Time-varying Shortlists of Candidate Regulators

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