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algn2pheno

A bioinformatics tool for rapid screening of genetic features (nt or aa changes) potentially linked to specific phenotypes

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin

classes_git

Class_homework_upload.

coalescent

coalescent theory, work and play

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

digits

Density estimation of hand-written digits. Use as prior of population of origin in admixed genomes.

docker

local_branch-insaflu-docker

docker-1

Easy installation for INSaFLU made by docker

docs

Text documents i want to share here because they look prettier in md.

efsa_parser

parse output of efsa pipeline to compound excel sheet.

entrez_direct

entrez_direct_app

fastq-split

a simple script to subset fastq files in a predictable and pair-end friendly way

filemanager

fine-scale-mutation-spectrum-master

Scripts for the study of mutation spectrum variation

galaxy_kde_classifier

Pipeline for the classification and exploration of local genomic variation.

heroku

App_deployment

ideogram_vis

imputation

VCF, dimensionality reduction, distances, KDE

insaflu

INSaFLU (“INSide the FLU”) is an influenza-oriented bioinformatics free web-based suite

insaflu_upload

Insaflu - Minion - output collection and automatic upload to Insaflu / analysis

intorust

Learn Rust real good.

kaust

work at KAUST

loter

A software package for local ancestry inference and haplotype phasing

mcm

Markov Chain Model Applications

membranes

Extracting membrane positions from microscope photography

metagen

django_metagenomics_website_toy

metagen_merge

app for merging metagen reports

models

Coordinating local genomic analyses.

mscount

pipeline for the study of mutation spectrum sampling variance under specific demographic scenarios.

nlas

Kinship structure of a temperate bat maternity colony