samuell Goto Github PK

followers: 209.0 following: 195.0 repos: 385.0 gists: 175.0

Name: Samuel Lampa

Type: User

Company: Karolinska University Hospital

Bio: Bioinformatician in clinical microbiology. Occasionally hacking on stuff like @flowbase, @scipipe & @rdfio

Twitter: smllmp

Location: Stockholm

Samuel Lampa's Projects

mentat

A persistent, relational store inspired by Datomic and DataScript.

micrornachr21

Code and documents related to "A New Approach Toward Discovering and Characterizing Orphan Genes in the Human and Neanderthal Genomes"

microsalt-fork

Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

moarlangz

Programming languages benchmark. For now using a simple string processing example.

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

movi-fork

Fast and cache-efficient full-text pangenome index

mtbls233-jupyter

OpenMS preprocessing, and R downstream analysis with Jupyter.

naiad

The Naiad system provides fast incremental and iterative computation for data-parallel workloads

nanodisco-fork

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.

nextflow

A DSL for data-driven computational pipelines

nextflow-tutorial

Nextflow training material for introductory tutorial

nf-training-fork

Nextflow training material

nfproviz

A small tool to parse experimental BioObject Component output from Nextlfow

nonconformist

Python implementation of the conformal prediction framework.

nupic

Numenta Platform for Intelligent Computing is an implementation of Hierarchical Temporal Memory (HTM), a theory of intelligence based strictly on the neuroscience of the neocortex.