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Sam Lewis's Projects

ase icon ase

A set of tools to analyse allele-specific expression (ASE).

az-intermediate-software-skills-course icon az-intermediate-software-skills-course

A course for intermediate-level best practice and software development skills for working as part of a team in a research environment developed for AstraZeneca (using Python).

blasttools icon blasttools

A set of tools for preparing, running and processing BLAST searches

bstoolkit icon bstoolkit

Scripts to work with whole-genome bisulfite sequence data

hpsource icon hpsource

A set of tools to find, analyze & visualize hairpin RNAs (hpRNAs)

rnaseqqc icon rnaseqqc

A pipeline to quality filter, trim adapters, despike (if necessary) and QC paired-end RNA-Seq data

srnaplot icon srnaplot

A tool to visualize various sRNA characteristics

srnaqc icon srnaqc

A pipeline to process and QC sRNA sequence data

teannotator icon teannotator

A pipeline to provide annotations of transposable element (TE) content in a genome

tecontent icon tecontent

Calculates the absolute and relative TE content of a genome

virusfinder icon virusfinder

A pipeline to identify viruses in paired-end RNA-Seq data

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