Comments (1)
Hi there, sorry for the delay in replying
These steps are essentially just related to the alignment done by MUMmer and so are not really part of MUM&Co (although used by MUM&Co.
So I don't think I can really help there unfortunately.
One solution, as it may speed up the alignments, is to remove the --maxmatch option
You can simply remove it with something like sed 's/--maxmatch//g' mumandco_v3.8.sh > mumandco_v3.8.no_maxmatch.sh
Let me know if that helps
Thanks
Samuel
from mumandco.
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