Comments (1)
SAMtoBAM
commented on August 23, 2024
Hi there, sorry for the delay in replying
These steps are essentially just related to the alignment done by MUMmer and so are not really part of MUM&Co (although used by MUM&Co.
So I don't think I can really help there unfortunately.
One solution, as it may speed up the alignments, is to remove the --maxmatch option
You can simply remove it with something like sed 's/--maxmatch//g' mumandco_v3.8.sh > mumandco_v3.8.no_maxmatch.sh
Let me know if that helps
Thanks
Samuel
from mumandco.
Related Issues (20)
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