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I am an independent researcher based in Seattle, studying the intersection of AI and neuroscience, with an emphasis on interpreting inner representations of AI models. I am a postdoc alumni of Jason Yeatman's Brain and Education lab (http://brainandeducation.com), where I applied CNN's to large neuroimaging datasets. I also have interests in fundamental AI: reinforcement learning, attention mechanisms, information geometry, and a dyanmical systems view of ANN's.

Sam Buck Johnson's Projects

backups icon backups

backup (stub) for ccnn refactor in progress

ccnn icon ccnn

UNets for neuroimaging, cortical parcellation

cnn-mri icon cnn-mri

Convolutional neural networks for analysis of cortical anatomy; experiments with different network architectures and input formats + data augmentation

cs330 icon cs330

A place to follow along with Stanford's CS 330 in Fall 2022

dlutil icon dlutil

Collection of deep learning utilities

hello-world icon hello-world

tutorial: https://docs.github.com/en/get-started/quickstart/hello-world

hft icon hft

A meta-learning approach to solving ARC (Abstraction and Reasoning Corpus)

jaxlens icon jaxlens

Implementation of transformer lens in JAX

ltov icon ltov

Simple code for testing the labor theory of value using IO tables

neuro-3d-vit icon neuro-3d-vit

Sulcal labeling using a vision transformer (ViT) U-Net.

neuro3dunet icon neuro3dunet

Cortical segmentation into multiple ROIs using a 3d unet applied to full 3d T1 anatomical MRI scans.

nilearn icon nilearn

Machine learning for NeuroImaging in Python

pyafq icon pyafq

Automated Fiber Quantification ... in Python

pytorch-3dunet icon pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

sherlock icon sherlock

A tutorial on convenient tools for use with the Sherlock computing cluster

sphericallabeling icon sphericallabeling

SphericalLabeling: Cortical Surface Labeling using Spherical Data Augmentation and Context-aware Training

swipesforscience icon swipesforscience

A general purpose citizen science game template for scientific research

unet icon unet

UNet-based cortical parcellation

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