sam-sims Goto Github PK

adventofcode2022

adventofcode2023

ambigviz

Identify and plot ambiguous nucleotide bases at given positions from a BAM file.

ambigviz.py

ambigviz is a Python tool that allows you to visualise mixed bases at given positions in a BAM file.

asteroids

Asteroids game in javascript

fastbac

fast neighbor joining trees for bacterial assemblies

fatcat

A paged, pretty printer for viewing FASTQ files in the terminal.

kractor

Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.

mir-search

ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

pico-home-monitor

Micropython implementation of networked tempetature/humidity sensor using a BME280 and pi pico microcontroller.

pico_wifi

A MicroPython module written for the raspberry pi pico to streamline the connection to a wireless network.

realtime-train-display

Display realtime train depature information from any UK station using an SSD1322 OLED display and a Raspberry Pi zero.

sars-cov-2-genomics

Course materials for an introduction to SARS-CoV-2 sequencing data analysis

spotify-art

Small webapp to analyse your spotify data, developed using Flask and P5js.

viralrecon-artic-1.3.0

Assembly and intrahost/low-frequency variant calling for viral samples