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Ryosuke Takeuchi's Projects

allenccf icon allenccf

Tools to work with Allen Inst CCF data in matlab

asovi-core icon asovi-core

Python library to control hardwares for neuroscience study

continuous_time_ca_sampler icon continuous_time_ca_sampler

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

crf-mapro icon crf-mapro

The sketch for mapping CRF with Processing [http://processing.org]

emacs-color-themes icon emacs-color-themes

A collection of custom and ST2 themes for Emacs. All the themes are named after personal programming and tech heroes.

ezroi icon ezroi

interactive interface for making ROI for image segmentation

gpfa icon gpfa

Gaussian Process Factor Analysis

matlab-emacs icon matlab-emacs

Major mode for Emacs for editing MATLAB code, and running MATLAB in an inferior shell. (forked on http://sourceforge.net/projects/matlab-emacs/) by Ryosuke Takeuchi 2014-02-07

mscanlab icon mscanlab

Unofficial Matlab codes for ".MDF" data made by MScan and MView (inc. Sutter instruments).

nd2 icon nd2

Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction

normcorre icon normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

oopsi icon oopsi

up-to-date code for model-based inference of spike trains from calcium imaging

rimec icon rimec

functional imaging and extra cellular recording processing codes

seekrfs icon seekrfs

Application for hand mapping of receptive fields of neurons in visual cortex

solr icon solr

Matlab and Python code for sparse ordinal logistic regression (SOLR).

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