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Name: Robin Warren
Type: User
Bio: I grab data from all over the world, put it into tables, and use it to build models to answer questions.
Location: USA - Midwest
Robin Warren 's Projects
amazon-sagemaker-healthcare-fraud-detection
Healthcare fraud detection using PCA based anomaly detection on multivariate data.
anomaly-detection-resources
Anomaly detection related books, papers, videos, and toolboxes
bi-temporal-database
Interface to a Bi-temporal database that will enable retrieval, deletion, addition and update of data. The concepts in the database are identified by their "LOINC" code.
bioinf-python
Python for Bioinformatics
biopython
Official git repository for Biopython (originally converted from CVS)
bookdown
Authoring Books and Technical Documents with R Markdown
bpp-seq-omics
Bio++ Sequence Omics Library
breast-cancer-data-analysis
Breast Cancer data analysis
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
cite-seq-count
A tool that allows to get UMI counts from a single cell protein assay
clear-hl7-net
.NET HL7® message generation and parsing library for the version 2.x standard
clickstream-analysis
Clickstream data analysis for a fictitious financial news media company, performed in Python and SQL
comp-loinc
covid-science-2020-cite-seq
CITE-seq COVID 19 infected vs. control PBMC
data.table
R's data.table package extends data.frame:
deeptools
Tools to process and analyze deep sequencing data.
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
diabetic_ketoacidosis_prevention
Diabetic US data set used.
douhaudatastudioserver
Douhau Data Studio Server is a data browser for CDISC SDTM built with R Shiny.
drop-seq
Java tools for analyzing Drop-seq data
edirectcookbook
exercises
fastapi
FastAPI framework, high performance, easy to learn, fast to code, ready for production
fastonto
This code extracts individual ontology ids from snomed, Loinc and RxNorm for further ontological modelling
fhir-hl7v2-integration-transform
A sample of implementing FHIR Works on AWS Integration Transform
fhir.resources
FHIR Resources https://www.hl7.org/fhir/resourcelist.html
gatk
Official code repository for GATK versions 4 and up
gsva
Gene set variation analysis
hail
Scalable genomic data analysis.
hapi-fhir
🔥 HAPI FHIR - Java API for HL7 FHIR Clients and Servers
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