rpadmanabhan Goto Github PK

bayesianstatistics

canu

A single molecule sequence assembler for genomes large and small.

cichlid_inversions

Cichlid Inversion analysis

clinical_metagenomics_2015_fall

Clinical Metagenomics pipelines

cutadapt

cutadapt removes adapter sequences from sequencing reads

deeplift

Public facing deeplift repo

egglaying-model

Scritps in R and Python to carry out analysis of egglaying dynamics in C.elegans

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

imseq

IMSEQ - IMmunogenetic SEQuence Analysis

js-scatterplot-test

mdp-rl-project

neural-networks

opentsne

Extensible, parallel implementations of t-SNE

persistent-homology

point-cloud-alignment

Useful links regarding aligning two Point Clouds

probability-i-proj

qiaseq-dna

example code for processing reads from QIAGEN QIAseq DNA enrichment kits

qiaseq-smcounter-v2

Low fraction somatic variant caller for QIAseq DNA panels

qt-python-test

read-trimmer

Paired end primer and adapter trimmer for QIASeq DNA/RNA reads

rpadmanabhan.github.io

rust-practice

Implementing code snippets in Rust

scip

Scheme code

test-case-private

Use case testing for a scenario where parts of a codebase live in public and private repositories

test-case-public

Use case testing for a scenario where parts of a codebase live in public and private repositories

test-handbook-docs

transcript-to-genomic