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Rowley Group's Projects

acfcalculator icon acfcalculator

This code is used to calculate autocorrelations functions of time series calculated using molecular simulation codes like NAMD.

charmm-conformation icon charmm-conformation

A set of scripts to perform a conformation search using replica-exchange MD features of the CHARMM molecular modeling code.

dielectriccalculator icon dielectriccalculator

A program to calculate the dielectric constant of a homogeneous liquid from a NAMD DCD/PSF file

liquefy icon liquefy

A VMD plugin to build molecular liquids

nnp-mm icon nnp-mm

Scripts to interface TorchANI NNP with NAMD

pyqueue icon pyqueue

A python library for generating PBS scripts and submitting them to queue

torsionbenchmark icon torsionbenchmark

Structures, parameters, and topology files for benchmarking force fields for torsional barriers

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