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Roger Zou's Projects

blender icon blender

BLENDER is a companion program to the DISCOVER-Seq assay to identify off-target editing sites from MRE11 ChIP-Seq experiments.

cell-sheet-tracker icon cell-sheet-tracker

Source code for "Deformable graph model for tracking epithelial cell sheets in fluorescence microscopy"

chipseq_pcrna icon chipseq_pcrna

Companion code for "Cas9 deactivation with photocleavable guide RNAs"

dseqplus icon dseqplus

Companion code for "Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq+"

logbookorganizer icon logbookorganizer

Some scripts to help create a dynamic logbook in my own style with HTML pages from LaTeX source files

mcm15 icon mcm15

Submission to the 2015 Mathematical Contest in Modeling (MCM)

multitargetcrispr icon multitargetcrispr

Companion code for "Massively parallel genomic perturbations with multi-target CRISPR reveal new insights on Cas9 activity and DNA damage responses at endogenous sites."

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