Comments (5)
Integration finished. Next, I need to find a way to map InChI to ChemIDplus and vice versa (perhaps using the existing ChemIDPlus dictionary).
from chemspot.
I hope you are finding OPSIN useful. Just to note unlike v0.9.0, v1.2.0 is available from Maven Central.
For resolving against databases, depending on the database in question, you may find the parseToStdInchi method more useful than parseToInchi. The difference is that the standard InChIs will not contain a layer indicating the specific tautomer a name described.
from chemspot.
Thanks Daniel! I'll switch to v1.2.0 and use standard InChIs for normalization. The Jochem dictionary used by ChemSpot has InChIs for its terms as well... so I guess InChI is the best choice. Alternatively, one could also provide CAS Registry IDs.
from chemspot.
CAS numbers are problematic as they are not open. Resolvers that can resolve to/from CAS numbers are limited to compounds for which a CAS registry number was submitted as synonym. With InChIs it is simple for someone else to generate the same identifier are you.
from chemspot.
Done
from chemspot.
Related Issues (20)
- Evaluate OSCAR on CRAFT HOT 1
- Solve problem with abstract entities in CRAFT corpus
- Improve match expansion HOT 1
- Improve recognition of short terms
- Make ChemSpot configurable HOT 1
- Maven deployment HOT 1
- Tagging text from command-line does not work
- Brics error when initializing ChemSpot HOT 1
- Loading resources from within the jar fails
- Tagging text is slow HOT 1
- Generic drug tagger constructor HOT 1
- Maven import is missing eumed.jar dependency HOT 3
- Suppress "Couldn't open edu.umass.cs.mallet.base.util.MalletLogger resources/logging.properties file" error HOT 1
- eumed-light.jar with newer version of scala
- change scala version to 2.11.8
- Unable to access jarfile chemspot.jar HOT 1
- Couldn't download SCAI corpus
- Seeking description of the columns in the output
- Tagging 1000 documents HOT 1
- Chemspot REST interface
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from chemspot.