rmsandu Goto Github PK

academic-kickstart

avolt

Ablation VOLume Tumor - Compute radiomics and modelling for liver tumor cancer

awesome-cv

Awesome CV is LaTeX template for your outstanding job application

cascaded-fcn

Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"

cracking-the-data-science-interview

Cracking the Data Science Interview

dams-dicom-anonymizer

DAMS aka DICOM-Anomymization-Mapping-Script

data-engineer-roadmap

Roadmap to becoming a data engineer in 2021

datadrivencv

R package for building customizable CVs from spreadsheets

deep-learning-for-medical-applications

Deep Learning Papers on Medical Image Analysis

dsb2017

Code for 2nd place solution to the 2017 National Data Science Bowl

dsb3

A deep learning framework for lung cancer prediction built with Lasagne/Theano

ellipsoid-fit

Approximate a cloud of points (3D/2D) with the inner and outer ellipsoid. Also known as the inner and outer Löwner-John ellipses.

iat-image-annotation-website

Browser-based image sketchpad for annotating several structures on an image. Output is a JSON/PNG/SVG binary 2D segmentation mask that can be re-loaded.

lesiontrack-website

A website for tracking over time in an organized manner the liver lesions of patients from different sources (images, treatment parameters, clinical data) .

lits-challenge

INFORMATION FOR THE LIVER TUMOR SEGMENTATION CHALLENGE

machine-learning-interview

Machine Learning Interviews from FAAG, Snapchat, LinkedIn.

matplotlib_for_papers

Handout for the tutorial "Creating publication-quality figures with matplotlib"

phd-thesis-template

This is a LaTeX template for the PhD thesis document. It uses EPFL's template for the chapters, and formats the front and last pages according to the University of Bern guidelines.

python-is-cool

Cool Python features for machine learning that I used to be too afraid to use

python-util-scripts

Python Snippets for plotting and saving, reading user input from keyboard, reading DICOM images, reading XML files.

pytorch-unet

Pytorch implementation of the U-Net for image semantic segmentation, with dense CRF post-processing

qam

Library to compute 3D surface-distances for evaluating liver ablation/tumor completeness based on segmentation images.

r-data-analysis

R code for statistical tests

raphael-sketchpad

A simple drawing editor that you can easily include with your forms

rmsandu.github.io

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

segmentation-eval

Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.

simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK

surface-distance

Library to compute surface distance based performance metrics for segmentation tasks.

xml-processing

Repository focused on extracting data from XML log files generated by computer assisted systems used in the OR.