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Name: RKI MF1 Bioinformatics
Type: Organization
Bio: Bioinformatics code of MF1
Location: Germany
Name: RKI MF1 Bioinformatics
Type: Organization
Bio: Bioinformatics code of MF1
Location: Germany
A practical introduction to long-read metagenomics in the context of the 2023 GHPP "Strengthening Genomic Surveillance" workshop..
NGS Summer School about Nanopore long-read bioinformatics and bacteria genome assembly.
Material for the SARS-CoV-2 data science course at FU Berlin.
A practical introduction to short-read bioinformatics for bacterial genome reconstruction in the context of the Madagascar IGS workshop.ct.
A practical introduction to long-read bioinformatics for bacterial genome reconstruction in the context of the Kenya MISSIoN project.
Eastern European Bioinformatics and Computational Genomics School (EEBG): Primer on linux, nanopore, and metagenomics
Practical introduction to long-read bioinformatics on the flu virus .
Plain simple amplicon sequence simulator for in-silico genomic sequencing assays
breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).
A tool suite for a simple, streamlined and rapid evaluation of variant callsets
A nextflow pipeline for decontamination of short reads, long reads and contigs
Application to find local anomalies in read coverage and to predict putative SV events
SARS-CoV-2 genome reconstruction for Illumina data in Nextflow
A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
covsonar 2: an updated version of covsonar, our database for storing and querying mutations and metadata
Snakemake pipeline to find potential giardia primer regions
Influenza genome reconstruction
Repository to host tool-specific module files for the Nextflow DSL2 community!
MpoxRadar frontend codebase: an interactive dashboard for genomic surveillance of MPXV.
RKI Bioinformatics Research team page
Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)
Python tool to calculate characteristic and signature mutations based on mutation profiles for a certain timeframe.
to update the primer bed positions from varvamp results based on given reference
Estimate SC2 lineage abundances from wastewater samples
Vocal is a simple Variants Of Concern ALert system script. Doc https://rki-mf1.github.io/vocal-doc/
Main resource for practical introductions to long-read bioinformatics.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.