rjwangbioinfo Goto Github PK
Name: Ruijia Wang
Type: User
Company: Vor Biopharma
Location: MA
Blog: rjwangbioinfo.net
Name: Ruijia Wang
Type: User
Company: Vor Biopharma
Location: MA
Blog: rjwangbioinfo.net
anaconda3_boto3_docker
APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach is the comparison of sequencing reads in regions demarcated by high-quality polyadenylation sites (PASs) annotated in the PolyA_DB database (https://exon.apps.wistar.org/PolyA_DB/v3/). The current version (v3.0) uses RNA-seq data to examine APA events in 3’ untranslated regions (3’UTRs) and in introns. The coding regions are used for gene expression calculation.
APAlyzer-QSr is a bioinformatics pipeline performing APA analysis using Quant-Seq REV data. In general it uses PolyA DB3 to clean the PASs indetified from the sequencing data.
Python Code For 'Clustering By Fast Search And Find Of Density Peaks' In Science 2014.
Pre-build PAS reference and testing data for APAlyzer
My personal website: http://rjwangbioinfo.net
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