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2019-elixir-docker_reproducibility_turin

Docker and Reproducibility

activerdf

Object oriented RDF in Ruby

basespace-dojo

basespace-ninja

basespace-ruby-sdk

BaseSpace Ruby SDK provides an easy-to-use Ruby environment that enables developers to authenticate users, retrieve data, and upload data from/to the BaseSpace cloud.

bfg-master-2020-course_conda

bfg-master-2020-course_git

bfg-master-2020-course_reproducibility

bfg-master-2023-course_git

bfg-master-2023-course_intro2r

bfg-test-01

bio-docker

Docker containers for bioinformatics, mostly NGS tools

bio-sparql-otf

Run SPARQL queries on biological data converting them in RDF On The Fly

bioconda-recipes

Conda recipes for the bioconda channel.

biogems.info

Tools for keeping track of biogems

biointerchange

Generates interchangeable RDF from non-RDF data sources.

bioruby

bioruby

bioruby-all

BioRuby plugins: ALL

bioruby-biogem-pap

bioruby-biolinux

Meta package for BioLinux distribution

bioruby-blessed

A metapackge for the accepted plugins/module from the BioRuby Developer Team

bioruby-core

BioRuby core plugins

bioruby-core-ext

BioRuby plugins with dependencies to external C libraries or tools

bioruby-faster

A fast and simple parser for Fasta / FastQ files

bioruby-foo

TODO: one-line summary of your gem

bioruby-full

This version of BioRuby install BioRuby, BioGem and a list of plugins.

bioruby-gem

BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package

bioruby-gex

BioRuby and Gene Expression, sef of funcitonalities to analyze gene expression data sets. Cufflinks Quantificaion and Differential Expression, RtPCR, Illumina etc...

bioruby-gfastqc

Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-) results from many different samples in a single web page, with charts and tables organized and simplified. The main goal is to speed up the communication process with colleagues (PIs, Biologists, BioInformaticians).

bioruby-kb-illumina

Gene expression Illumina Annotations, Humans