rjohns03 Goto Github PK

benchmarks

HPC Benchmarks for most popular applications in Chemistry, Physics, Biology, and some other related subjects

blastdbget

Download Blast databases from ftp.ncbi.nlm.nih.gov/blast/db, validate, and extract.

charlesscripts

My awesome scripts for Arch Linux or Ubuntu Gnome latest LTS or MacBook.

command-line-text-processing

From finding text to search and replace, from sorting to beautifying text and more

dftworkshop

dotfiles

:wrench: .files, including ~/.macos — sensible hacker defaults for macOS

dotfiles-1

~rtomayko

dv

Disk Usage Visualization

fonts

Patched fonts for Powerline users.

galaxy

Data intensive biology for everyone.

gizak.github.io

My Personal Website

hpctoolkit

HPCToolkit performance tools: measurement and analysis components

iterm2-color-schemes

Over 150 terminal color schemes/themes for iTerm/iTerm2 (with ports to Terminal, Konsole, PuTTY, Xresources, XRDB, and Terminator)

laptop

A shell script to set up a macOS laptop for web and mobile development.

linuxgems

A succinct cheat sheet for newbie linux coders and system administrators, documenting some of the more obscure and useful gems of linux lore. Intended to be viewed in emacs org-mode, or VimOrganizer, though any text editor will suffice.

ncbi-blast-dbs

Fast download BLAST databases from NCBI.

orca-scripts

Various scripts that I have collected from around the web for interacting with the ORCA electronic structure suit. Many of these scripts are from the Orca Input Library, but I intend to collect any script I find or write, license permitting, for working with this fantastic application for doing atomic orbital based DFT and other ab initio electronic structure

pandoc-starter

Template *.md and Makefiles for getting started with pandoc

pbs-scripts

My PBS submission scripts for CARC machines.

psi4education

Psi4Education Labs Public Repository. If you are submitting a new lab, please submit it to the psi4education-instructor repo.

psi4numpy

Combining Psi4 and Numpy for education and development.

rjohns03.github.com

sarviewer

Generate graphs with gnuplot or matplotlib (Python) from sar data

saved-code

Useful Code for Future Reference

scriptsforvasp

Making life easier using scripting languages (Bash and Python) to facilitate multiple VASP simulation jobs preparation, submission and analysis.

spark-on-wheeler

Example Spark (Hadoop without hdfs) job that runs within Torque (PBS) on the wheeler machine at CARC

tiddlylisp

A toy Lisp interpreter and simple eval function

vimrc

The ultimate Vim configuration: vimrc