Support for multiple sequences in the input reference FASTA file about ampligone HOT 4 CLOSED

Just a quick update, multi-reference support is added in cd4f413

I'm still testing some things and making sure everything works as intended, but hopefully i can release this soon.

from ampligone.

@BertBog This has now been released in version 1.3.0
This version can already be installed through pip with pip install AmpliGone==1.3.0
Installation through conda for this version should be available somewhere in the next 24 hours as we have to wait for the review/merge from the bioconda team.

If you come across any issues with this new feature please let us know and good luck with your Influenza analyses!

from ampligone.

Dear Bert,

Thank you for your issue submission. Glad to hear our tool was useful for your SARS-CoV-2 analysis.

The issue that you're describing is a known problem with the current implementations of AmpliGone. I've added it to our backlog to have it solved in the next release (1.4.0) but i currently can't provide a time estimate for this.

We're currently working around this ourselves by simply processing all Influenza segments individually.
I do however think that processing all segments at once like you're describing is in-scope of this project and it will be added as soon as i can get to it.

I hope in the meantime you can still continue with your Influenza analyses regardless of this issue.

Best regards,
Florian

from ampligone.

Thanks a lot for fixing this so quickly! I'll let you know if I experience any issues with the new functionality.

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