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analytics_vidhya

Codes related to activities on AV including articles, hackathons and discussions.

braininablender

An R package that allows the user to estimate the relative cell type balance in brain cortical samples using microarray or RNAseq data as presented in the manuscript "INFERENCE OF CELL-TYPE COMPOSITION FROM HUMAN BRAIN TRANSCRIPTOMIC DATASETS ILLUMINATES THE EFFECTS OF AGE, MANNER OF DEATH, DISSECTION, AND PSYCHIATRIC DIAGNOSIS" (http://biorxiv.org/content/early/2016/11/25/089391.full.pdf+html) by *Megan Hastings Hagenauer, Ph.D.1, Jun Z. Li, Ph.D.2, David M. Walsh, Psy.D.3, Marquis P. Vawter, Ph.D.3 Robert C. Thompson, Ph.D.1, Cortney A. Turner, Ph.D.1, William E. Bunney, M.D.3, Richard M. Myers, Ph.D.4, Jack D. Barchas, M.D.5, Alan F. Schatzberg, M.D.6, Stanley J. Watson, M.D., Ph.D.1, Huda Akil, Ph.D.1 1Mol. Behavioral Neurosci. Inst., Univ. of Michigan, Ann Arbor, MI, USA;  2Genet., Univ. of Michigan, Ann Arbor, MI, USA;  3Univ. of California, Irvine, CA; 4HudsonAlpha Inst. for Biotech., Huntsville, AL, USA; 5Stanford, Palo Alto, CA, 6Cornell, New York, NY, USA 

composed

Code for COMPOSED method of merging brain regions for classification or regression tasks

examples

Various examples for different articles

gwas-pw

Pariwise analysis of GWAS

random_mandala_plot

Generate a random pretty mandala plot in R

rmarkdown_may11_2016

Workshop lesson for "Dynamic documents with RMarkdown and Knitr" that was hosted on May 11th, 2016 through the Data Intensive Biology Training Program.

targetpred

In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

user-machine-learning-tutorial

useR! 2016 Tutorial: Machine Learning Algorithmic Deep Dive http://user2016.org/tutorials/10.html

vcf2bed