richardbeare Goto Github PK

2018-05-08-monashcarpentry

https://richardbeare.github.io/2018-05-08-monashcarpentry

abcd-dicom2bids

For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.

abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

agilent2dicom

Agilent 9.4T MR Image Processing and DICOM Converter App

ansible-role-lmod

deploys Lmod

ants

Advanced Normalization Tools (ANTs)

antspy

Advanced Normalization Tools in Python

arduinostatemachine

My setup to use QuantumLeaps hierarchical state machine software for Arduino, under linux.

ascia_vis_workshop

Instructions and test data for the ASCIA workshop on visualisation in R and ggplot2

braingraph

Graph theory analysis of brain MRI data

budgiebot

Wikipedia bot to add JIPA citations to language articles

calciumcharacterisation

Segmentation and characterisation of cardiac tissue

choco-rtools

Chocolatey package for Rtools

cifti

R toolbox for CIFTI files

cogstack-nifi

Building data processing pipelines for documents processing with NLP using Apache NiFi and related services

commissiononstroke

Interactive display of maps in the Lancet Neurology paper: Commission on Stroke: The Wind of Change

covbat_harmonization

Correcting Covariance Batch Effects (CovBat): Harmonization of mean and covariance for multi-site data

cubelyr

A data cube dplyr backend

denmark-lvostroke

This page is part of a collaboration to study acute stroke service in Denmark

directionalgradient

ITK directional gradient filter

directionalmorphology

Erosions and dilations along lines, direction defined by a vector field

emudata

emudata R package from sourceforge

emuext

Extra plotting and smoothing tools for emu speech package

emur

maintenance for the emu R package from sourceforge.

freesurfer

The official FreeSurfer repository maintained by LCN

fw-ants-vbm

geospatialstroke

ggforce

Accelarating ggplot2

ggmap

a package for plotting maps in R with ggplot2

ggraph

Grammar of Graph Graphics