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simleo avatar simleo commented on June 27, 2024

This is not a runcrate bug. It's the RO bundle that's invalid due to the presence of the extra files generated by the Mac. For instance, with cwlprov:

$ cwlprov -d PROV/ validate
WARNING:bdbag.bdbagit:data/.DS_Store exists on filesystem but is not in the manifest
ERROR:cwlprov.tool:BagIt validation failed for: /tmp/temp/PROV: Bag validation failed: data/.DS_Store exists on filesystem but is not in the manifest

Maybe you browsed the RO bundle with after it's been generated by cwltool and the Mac added its metadata files, making the structure invalid. If those files are removed, the RO bundle becomes valid again.

$ find PROV/ -name .DS_Store -exec rm -fv {} \;
removed 'PROV/data/.DS_Store'
removed 'PROV/metadata/.DS_Store'
removed 'PROV/.DS_Store'
$ cwlprov -d PROV/ validate
Valid CWLProv RO: PROV

from runcrate.

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