Comments (2)
Hi @RegnerM2015, thanks for asking. We do run it for a few millions SNPs as the data we included in our supplementary data for all common SNPs. I tested in our server and ~1k SNPs takes 10 minutes. So 1 million SNPs may take ~7 days. A better way to speed up is to run gkmpredict for multiple models parallel. But you will need to modify the script yourself.
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Close the issue due to no follow up. Feel free to reopen if you have additional questions.
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