Name: Reginaldo Rosa, PhD
Type: User
Company: University of Southern California (USC)
Bio: Ph.D. in Cancer Genetics from the University of Sao Paulo - Brazil and the Gustave Roussy Cancer Center (France).
Twitter: ReginaldoCARosa
Location: United States
Blog: https://www.linkedin.com/in/reginaldo-rosa-mba-phd-202b625b
Reginaldo Rosa, PhD's Projects
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A Shiny web app for mapping datasets using Seurat v4
Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
Cellsnake tool main repo
NicheNet: predict active ligand-target links between interacting cells
R client for the OmniPath web service
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
:exclamation: This is a read-only mirror of the CRAN R package repository. scSorter — Implementation of 'scSorter' Algorithm
R toolkit for single cell genomics
Community-provided extensions to Seurat
Repo for January 2024 iteration of course
This repository is all about understanding single cell data analysis and interpretation of the outputs.
Transformer for One-Stop Interpretable Cell-type Annotation