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Convert between AnnData and SingleCellExperiment
AnnData OOM tools
tweet about anonymous Wikipedia edits from particular IP address ranges
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
Conda recipes for the bioconda channel.
Discrete Self Replicating Birth Death Process
Bustools CLI implementation in Rust
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
Run cellbrowser on multiple datasets, creating a hierachy from a simple .yaml
CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
python version of inferCNV
Code for the STORMing Cancer Esophagus Atlas paper
Fast fibonacci coding/compression of integers
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.
A command-line interface and python module for R's GSVA bioconductor package
Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods, in revision
Inferring CNV from Single-Cell RNA-Seq
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
training neural networks implemented with lasagne
LIANA+: an all-in-one framework for cell-cell communication
some code to compose MNIST digits into more complex images/arangements
python code to deal with time-lapse microscopy data
NewPFD compression/decompression of integers in Rust
kallisto quantification of a cellranger-processed 10x experiment (its bamfile)
Nextflow pipeline for pathogen discovery via gatk-pathseq on scRNAseq
Structured data about Panama papers collected from official ICIJ website
LDA on research papers in my bibliography
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.