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a4adiags

Diagnostics for FLa4a stock Assessment Models

applying-length-based-methods-to-fisheries-resources-of-the-bay-of-biscay-and-iberian-coast

The code used to apply LBI and LBSPR in the article (Assessing the sensitivity of length-indicator methods for resources in the Atlantic waters) together with the corresponding results.

aspic

ASPIC biomass dynamic model extends biodyn

assessing-the-stock-status-of-the-data-poor-common-sole-8c9a

R code used to apply (1) the length-based indicator, (2) the length-based spawning potential ratio and the (3) Mean length-based mortality estimators to the common sole (Solea solea) in the ecoregion of the Bay of Biscay and Iberian Coast ecoregion.

atsa

Applied Time Series Analysis - course website repository.

atsa-labs

Labs developed for Applied Fisheries Time-series Analysis course. The link for the text is https://nwfsc-timeseries.github.io/atsa-labs/

atsalibrary

Data, scripts and packages for ATSA course and book. Students should install this before running examples in the lab book.

atsar

Applied time series analysis in R with Stan. Allows fast Bayesian fitting of multivariate time-series models.

blog_quarto

Personal blog (using quarto)

cmsy-iccat

“ICCAT-friendly” version for the original CMSY R code by Froese et al. (2016)

connectaspic

create_map_study_area

dlmtool

DLMtool: management strategy evalaution and implementation of data-limited fishery stock assessment methods

dsbook

Repository for data science book

dslabs

Data Science Labs R package: includes functions and data for data science courses

etc3550slides

Slides for a forecasting course based on "Forecasting: Principles and Practice"

fishdynr

R package of fisheries science related population dynamics models

fishingmaps

Make maps of the (kw)fishing hours and SweptAreaRatio in North Sea and Celtic Sea

fishlife

Estimate fish traits for all marine fish species globally

free_r_tips

Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every week.

geostatistical_delta-glmm

Tool for geostatistical analysis of survey data, for use when estimating an index of abundance

glmm-course

Workshop exercises on regression, GLMs, mixed-effects models, and GLMMs in R

glmmtmb

glmmTMB

gmbi

global marine biodiversity indicators (gmbi; pronounced "gumby")

ices_msy

ICES methods for setting proxy MSY reference points for stocks in categories 3 and 4

infographiqr

R functions for creation of interactive intelligent infographics, ie infographiq

intro-data-viz-winter-2017

Introduction to Data Visualization and Data Wrangling in R

jabba

Just Another Bayesian Biomass Assessment

jabba-select

Repository for JABBA-Select

lbi_shiny

Shiny app to explore length-based indicators