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al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

ambiqsuitesdk

A copy of the AmbiqSuite SDK available on GitHub. Can be used to include AmbiqSuite as a submodule. May be used to track issues in SDK releases, however this repo is not maintained by AmbiqMicro

analysis-tools

Code for analyzing data saved by the Open Ephys GUI

anipose

🐜🐀🐒🚶 A toolkit for robust markerless 3D pose estimation

aniposelib

📷 🐊 An easy-to-use library for calibrating cameras in python

bringing-old-photos-back-to-life

Bringing Old Photo Back to Life (CVPR 2020 oral)

data-analysis

Borton Lab LFP Neural Data Analysis

deeplabcut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

deeplabcut-live

SDK for running DeepLabCut on a live video stream

deeplabcut-live-gui

GUI to run DeepLabCut on live video feed

electropy

Classical electrodynamics simulation toolset for Python

elephant

Elephant is the Electrophysiology Analysis Toolkit

ephyviewer

fooof

Parameterizing neural power spectra into periodic & aperiodic components.

hampel_filter

Python implementation of the Hampel Filter

isi_anaconda_environment

isi_analysis_python

kcsd-python

Kernel Current Source Density

kilosort

Fast spike sorting with drift correction for up to a thousand channels

mujoco

Multi-Joint dynamics with Contact. A general purpose physics simulator.

musclespindlecircuitsmodel

This repository contains the code of the neural simulations performed in: Formento, E. et al., Electrical spinal cord stimulation must preserve proprioception to enable locomotion in humans with spinal cord injury, Nature Neuroscience (2018).

neuraltraj

Matlab codepack for performing dimensionality reduction on neural data using TD-GPFA or GPFA.

neurodac

Functions to control the NeuroDAC system

neurodsp

Digital signal processing for neural time series.

neurotic

Curate, visualize, annotate, and share your behavioral ephys data using Python

o2mconverter

OpenSim to MuJoCo XML converter

oshpark-eagle-tools

Scripts and tools for Eagle PCB Design software

patsy

Describing statistical models in Python using symbolic formulas

peakutils

PeakUtils mirror from bitbucket.

proprioprostheticsbehavioralcontrol

code for monkey behavioral control in the proprioprosthetics project