Comments (6)
I just received a DOI from JMRI for the article. It is not yet online as it is still in production, but should be fine for use in the meantime. This paper is focused on a DL segmentation tool using the masks. A second article focused on the PROSTATEx quality control and lesion annotations is still under review.
The article details are:
Journal: Journal of Magnetic Resonance Imaging
Article DOI: 10.1002/jmri.27585
Article: Deep learning whole-gland and zonal prostate segmentation on a public MRI dataset
Authors: Renato Cuocolo, Albert Comelli, Alessandro Stefano, Viviana Benfante, Navdeep Dahiya, Arnaldo Stanzione, Anna Castaldo, Davide Raffaele De Lucia, Anthony Yezzi, Massimo Imbriaco
Formatted for typical journal use: Cuocolo R, Comelli A, Stefano A, et al (2021) Deep learning whole-gland and zonal prostate segmentation on a public MRI dataset. J Magn Reson Imaging. https://doi.org/10.1002/jmri.27585
from prostatex_masks.
The main paper has been finally accepted and is undergoing typesetting. As soon as details are available I will update the repository page and close this issue.
from prostatex_masks.
Yes, the paper was recently accepted after revisions on JMRI, we are awaiting proofs and DOI (hopefully in a short time) to add it to the repository.
Thank you again for your interest and please let me know if you find any issues or have any ideas to contribute to the repository.
from prostatex_masks.
Perfect, thank you ๐ Also, congratulations on the accepted paper :)
from prostatex_masks.
Paper is now officially online: Cuocolo R, Comelli A, Stefano A, et al (2021) Deep Learning WholeโGland and Zonal Prostate Segmentation on a Public MRI Dataset. J Magn Reson Imaging. https://doi.org/10.1002/jmri.27585
The readme has been updated. I hope the paper on the audit process specifically will also be available soon.
from prostatex_masks.
The paper is now online:
R. Cuocolo, A. Stanzione, A. Castaldo, D.R. De Lucia, M. Imbriaco, Quality control and whole-gland, zonal and lesion annotations for the PROSTATEx challenge public dataset, Eur. J. Radiol. (2021) 109647. https://doi.org/10.1016/j.ejrad.2021.109647.
This information has been added to the readme file, now all relevant references are available to cite the repository.
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Related Issues (19)
- [Q] ProstateX-0025 & ProstateX-0113 HOT 4
- Unmatched size of prostate masks HOT 4
- ADC mask slice order is inverted/flipped according to the ADC dicom slices HOT 1
- Varying T2WI sequence used for drawing prostate/zonal masks and lesion masks HOT 1
- Request for radiomic feature extraction HOT 2
- Submit to TCIA? HOT 5
- download link of image nii files HOT 5
- Can a list of training and test sets be provided? HOT 1
- Can Pirads score of each findings be provided? HOT 1
- Question about the dataset
- A question about the marked lesion mask HOT 1
- Errors in several zone segmentation masks HOT 4
- Multi-parametric lesion segmentation HOT 3
- Further details about contouring HOT 2
- Radiologist scores for annotated lesions HOT 12
- Refinements to a subset of lesion masks HOT 7
- number of slices in masks is not always the same as number of slices in the scan HOT 5
- There is something wrong about the ProstateX-0142 Finding 3 geometry HOT 11
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