Comments (2)
Hi Chao
The RF model has been trained as described in the paper - by default the code do not filter on an arbritary cutoff or threshold but utilise the label-prediction of the model.
Best,
Joachim
from phamb.
But this then probably means that 50 percent of the trees need to predict the contig as virus?
from phamb.
Related Issues (20)
- modified header names in PHAMB HOT 4
- Versioned release package for Phamb HOT 16
- Parsing deepvirfinder line 512, in _parse_dvf_row contig_name, length, score, pvalue = line[:-1].split() HOT 2
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- Update shebang lines in phamb python scripts HOT 2
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- VAE or AAE? HOT 1
- How to Run - not in parallel - quick and dirty HOT 1
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- Can PHAMB be used directly for Virome analysis (enrichment of viral particles followed by sequencing) HOT 2
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from phamb.