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2020-mem3dg-applications

2023-axon-pearling

2023-idp-bending

actincme

actin filament orientations

actuatorforceestimation

Estimating forces on the membrane by ActuAtor

ampar-ode-bell

Files for Bell et al, ODE AMPAR paper

ampar-pde-bell

COMSOL files for AMPAR PDE work

ampkmtor2022

biophysical-3d-modeling-of-actin-mediated-structural-plasticity

cableequation

camp-pka-spatial

camp-pka-temporal

ciukf-mcmc

Comprehensive uncertainty quantification framework for system biology

coupled-switches-secretion

cvae_testbed

A research testbed on conditional variational autoencoders using Gaussian distributions as input

dlite

Let's infer the forces that cells generate during time series by looking at the angles they make with each other.

emm

Let's try to output an endocytic membrane shape that most resembles an arbitrary EM image of the same!

fbp_nwasp_nanopillar

felicity-finite-element-toolbox

Finite ELement Implementation and Computational Interface Tool for You

fully_factorizable_cvae

A fully factorizable conditional variational autoencoder for cell images

gamer

Geometry-preserving Adaptive Mesher

gamer_tutorials

hassinger-rangamani-2017

Matlab code for simulations performed in Hassinger et al 2017 - doi: 10.1073/pnas.1617705114

lee-laughlin-gamer2

High resolution movies and supplemental files

lpd_droplets

Files used to simulate LPD droplet dynamics

mechanocircadian

MATLAB-based implementation of the coupling between the cell Circadian clock and mechanotransduction.

mem3dg

3-D computational model for lipid membrane

membrane-neck-formation

Axisymmertric modeling of a membrane neck using Helfrich energy

modeling_membrane_curvature_generation_using_mechanics_and_machine_learning

morphological_principles_of_neuronal_mitochondria

This repository contains all the code used for the publication "Morphological principles of neuronal mitochondria".