allow pandoc option setting from saveWidget about htmlwidgets HOT 7 CLOSED

Same issue here for Karl Broman iplot (testjs package). Possible solution seems to be setting selfcontained=FALSE

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Thanks for reporting this. We will investigate the issue and figure out potential solutions to fix it.

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The problem can be related to the size of the data being placed in the widget. With R/qtlcharts, I get this stack space overflow error only for the iplotMScanone function, and only with larger data sets. Here's an example (a subset of this gist):

library(qtl)
library(qtlcharts)
library(htmlwidgets)
data(grav)
grav$pheno <- grav$pheno
grav <- calc.genoprob(grav)
out <- scanone(grav, phe=1:nphe(grav), method="hk")

# this is okay
out_plot1 <- iplotMScanone(out, lodcolumn=1:103)
saveWidget(out_plot1, file="tmp1.html")

# this gives "stack space overflow"
out_plot3 <- iplotMScanone(out, lodcolumn=1:104)
saveWidget(out_plot3, file="tmp3.html")

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This should be fixed now. See here

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Excellent!

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agreed! #ty for this!

On Thu, Jul 9, 2015 at 12:10 PM, Karl Broman [email protected]
wrote:

Excellent!

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BTW I've subsequently discovered that it's best to increase the pandoc
stack size to ~ 512MB for all pandoc operations:

259bc3c

So you shouldn't require fiddling with the arguments manually any longer.

On Thu, Jul 9, 2015 at 3:39 PM, boB Rudis [email protected] wrote:

agreed! #ty for this!

On Thu, Jul 9, 2015 at 12:10 PM, Karl Broman [email protected]
wrote:

Excellent!

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