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b-sim

Physically Accurate Structured Illumination Microscopy Reconstruction

beast.jl

Boundary Element Analysis and Simulation Toolkit

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioformatsloader.jl

A julia package to load images using bioformats

catviews.jl

Concatenated Array views in Julia.

chainrules.jl

forward and reverse mode automatic differentiation primitives for Julia Base + StdLibs

chromatix

Differentiable wave optics using JAX! Documentation can be found at https://chromatix.readthedocs.io

cuda.jl

CUDA programming in Julia.

cudamat

CudaMat enables fast computing on graphics cards that supports the CUDA programming language. Currently such cards are available from NVidia. CudaMat is, as much as possible, invisible to the user. The idea is that the user can transform any existing Matlab code into a CudaMat code with minimal effort. E.g. with a single line like a=cuda(a) the Matlab object 'a' gets transformed into a CudaMat object 'a'. This can be checked using the matlab command whos.

cudamat.jl

Allows CudaMat to be called from Julia

da-rnn

Dual-Stage Attention-Based Recurrent Neural Net for Time Series Prediction

datatofunctions.jl

Represents (measured) data as a function, which supports scaling and shifting. It is intended to be used as a tool for fitting data, where the fitting function is given by measured data.

deconv

deconvoptim.jl

A multi-dimensional, high performance deconvolution framework written in Julia Lang for CPUs and GPUs.

findshift.jl

Julia functions for aligning data, finding and optimizing peaks in Fourier space and alike.

imswitchuc2

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

integralarrays.jl

Julia Implementation of Integral Arrays

inversemodeling.jl

iphtnyquist

A Javascript app to calculate Nyquist sampling

jac.jl

Jena Atomic Calculator

javacall

Give list of java available methods when wrong methods are call from Julia.

javacall.jl

Call Java from Julia

javashowmethods.jl

Allows better error messages via introspection

khoros

makie.jl

High level plotting on the GPU.

orthoview.jl

pointspreadfunctions.jl

Toolbox for calculating optical PSFs

recipes

An app hosting recipes to be processed by the user

registrationnufft.jl

Registers images based on the non-uniform FFT which enables user-defined (arbitrary) coordinate transforms.

roiviews.jl

Allows to view multiple regions of interest (ROIs) of the arrays to be accessed as an array. Provided `center_pos` and `ROI_size` can have fewer dimensions than array.