Comments (2)
thermokarst
commented on July 26, 2024
Hi @michaelkarlcoleman! I moved this from the qiime2 (framework) issue tracker to the q2cli issue tracker: q2cli is the QIIME 2 interface that actually uses (and depends on) click.
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Oddant1
commented on July 26, 2024
We would LOVE to do this for a great many reasons. We basically consider the usage of click to be technical debt at this point, but we don't have the resources to make the change at this time. I'm going to remove this from the issue tracker because we're currently cleaning up old issues, but know that this is even still vaguely on our radar. It would just necessitate a rewrite of the entire cli.
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Related Issues (20)
- Installed qiime2 but getting SyntaxError: invalid syntax error HOT 2
- ZSH 5.8 Tab Completion Error When Activating QIIME2 Environment HOT 4
- Alternative boolean representation HOT 1
- Update to click==8.0.0 breaks cache refresh on 2021.8.dev HOT 1
- BUG: q2cli usage handing bad type expressions to framework when TypeMap HOT 1
- allow qiime tools peek to take multiple arguments HOT 1
- stdout on creation of artifact cache entry HOT 1
- `qiime tools import --show-importable-formats` => add format descriptions HOT 2
- BUG: recycle mixup between default cache and output `cache:key` HOT 5
- `qiime tools view`: Snap-installed browers can't open `/tmp` HOT 2
- q2cli should hide actions with names that start with `_` HOT 2
- De-Facto keyed collections do not like paths starting with ~
- Provenance-Replay cannot handle cached artifacts
- enable direct-to-cache imports HOT 2
- improve error message from `qiime tools replay-proveance` on invalid input file path HOT 2
- BUG: CLI says missing metdata-file when a metadata column is not passed in. HOT 2
- Used cache does not get set early enough HOT 1
- PluginManager intialized by importing Usage driver
- `--citations` should report plugin citations when called on an action HOT 1
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