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2018_winter_internship

a-pytorch-tutorial-to-object-detection

SSD: Single Shot MultiBox Detector | a PyTorch Tutorial to Object Detection

asr-evaluation

Python module for evaluating ASR hypotheses (e.g. word error rate, word recognition rate).

bee

biobert-pytorch

PyTorch Implementation of BioBERT

biograkn

BioGrakn Knowledge Graph

cam

Class Activation Map with Pytorch

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

cmg

Controlled Molecule Generator for for Optimizing Multiple Chemical Properties

dcm-net

This work is based on our paper "DualConvMesh-Net: Joint Geodesic and Euclidean Convolutions on 3D Meshes", which appeared at the IEEE Conference On Computer Vision And Pattern Recognition (CVPR) 2020.

dearwxpub

a neural network-based feature selection algorithm for next-generation sequencing data

deeplearningzerotoall

TensorFlow Basic Tutorial Labs

deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

deepspeech

A TensorFlow implementation of Baidu's DeepSpeech architecture

dti_pdbbind

eoulsan

A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

gnn-model-explainer

gnn explainer

gnn_scaffold_based_drug_generation

grakn

Grakn Core: The Knowledge Graph

graphvite

GraphVite: A General and High-performance Graph Embedding System

heatmap_gui

kglib

Grakn Knowledge Graph Library (ML R&D)

machine-learning-for-proteins

Listing of papers about machine learning for proteins.

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

medical-data

medline

Computing term cooccurrence in MEDLINE

mhcflurryproject

moleculekit

MoleculeKit: Your favorite molecule manipulation kit

mt-dti

An official Molecule Transformer Drug Target Interaction (MT-DTI) model