Name: Peter Rupprecht
Type: User
Company: Brain Research Institute
Bio: Neuroscience junior group leader. Calcium imaging, ephys, microscopy, data analysis. PhD with Rainer Friedrich. Postdoc with Fritjof Helmchen.
Twitter: ptrrupprecht
Location: Zürich
Blog: ptrrupprecht.wordpress.com
Peter Rupprecht's Projects
A lens to undistort sinusoidal scan trajectories
Extracting and analyzing activations of the Inception network
A toolbox for inferring spikes from calcium traces.
Analysis of temporal dispersion from calcium imaging data processed with a spike inference algorithm
Calculate the z-range using a remote ETL
[Experimental fork] Calibrated inference of spiking from calcium ΔF/F data using deep networks
Python code for merging and refinement of detected neurons in large 3D stacks
A database of inference speed benchmark results on various platforms and architectures
Drawing ROIs with a non-graphical user interface
Some scripts for electrophysiological data analysis (mainly Matlab)
A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
Calculates the generalized Hurst exponent of a time series
The Hodgkin-Huxley neuron model, simulated both in current clamp and voltage clamp
Instrument Control for Microscopes and Accessories
A python class for communicating with the Luigs & Neumann SM-5 control box.
Matlab Ca imaging data analysis library 2016
DAQmx Examples using MATLAB
Pulse dispersion, dielectric mirrors and fluorescence yield
ABCD optics analysis for remote z-scanning using Mathematica
A simple model-based algorithm for the spikefinder competition
Keras network for spike detection from calcium traces
Analysis code for the results of the spikefinder challenge
A scalable implementation of WobblyStitcher for 3D microscopy images
Using a pre-trained GoogLeNet and the Deep Dream technique to analyze Gram matrices
Unsupervised Quantification of Animal Behavior