prnicovich Goto Github PK
Name: Rusty Nicovich
Type: User
Bio: Microscope builder and image analyzer
Location: Seattle
Rusty Nicovich's Projects
3d-printed-optics-lab-parts
Various parts made for fluorescence microscopy + optics work
benlidechambers
Files and assembly instructions for 3D printed microscopy imaging chambers. Work done by Ben Goodnow for Single Molecule Science at UNSW.
blogwork
Scripts from my blog
ccf_registration_2020
CCF Registration Competition 2020
cell_count
cheesospim
A cheap mesoscopic light sheet and optical projection tomography microscope
clusdoc
Repository associated with Clus-DoC clustering and degree of colocalization analysis
co2tin
Pocket-sized CO2 sensor
continuous_frc_smlm
Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)
da8568c
DA8568C Arduino Library
deltagp
MATLAB code associated with DeltaGP analysis
fscs
Code associated with fluorescence spectral correlation spectroscopy analysis
galah
GALAH GUI interface for analysis of filaments in fluorescence microscopy
houseprojects
Around-the-house woodworking and design projects
hx711_circuitpython
Forking HX711 code to work w/ clearing 'bot
makesmlmframes
Simulation code for SMLM data starting with experimental detection event table
matrixticker
Firmware for 8x8 animated LED matrix
nbt-ra37689
MATLAB code associated with Ma, et al. "A FRET sensor enables quantitative measurements of membrane charges in live cells."
nicolase
Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy
nmeth-c19079a
Custom analysis scripts used in Nature Methods publication NMETH-C19079A
nprot.2016.166
Code associated with publication "Turning single-molecule localization microscopy into a quantitative bioanalytical tool" Philip R Nicovich, Dylan M Owen & Katharina Gaus Nature Protocols volume 12, pages 453–460 (2017)
olympus_organizer
pavest
Photo-activated vesicle tracker MATLAB GUI
pyqtgraph
pyqtgraph main development repository
raspberrypi
Python for Raspberry Pi
serialmultiplexer
Liquid handling robot for in situ serial multiplexing
singlemoleculesurfaceevaluation
smlmsurfacereconstruction
3D surface reconstruction from single molecule localization microscopy data
storm-control
Zhuang lab microscope control software
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