Name: Diogo Pratas
Type: User
Company: University of Aveiro & University of Helsinki
Bio: Computational Virology, Bioinformatics, Data compression, Ancient DNA, Information Theory, Algorithms, Genomics, Computational Medicine, Machine Learning
Twitter: DgPratas
Location: Aveiro, Portugal
Blog: http://pratas.github.io
Diogo Pratas's Projects
Linux admin usefull tools
Example: Fetch reads from a huge FASTQ by relative similarity
Analysis of DNA sequences using algorithmic entropy (Kolmogorov complexity)
Accelaration Patterns of Evolution
ARIS
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Composition analysis of a Poolepynten ursus maritimus ancient sample
contamination vs ancient
Automatic construction of genome and chromosomal databases for metagenomics
DNA JARVIS
Efficient detection of Distant Low Complexity Regions
A DNA sequence corpus for compression benchmark
An ultra-fast tool to find relative absent words in genomic data
Ultra-fast mapping and visualization of similar genomic regions
Resources for falcon paper
Efficient compression of genomic sequences
An efficient DNA sequence compressor using Neural Networks
A toolkit for DNA sequence analysis
The genomics toolkit
The second version of the genomics-proteomics toolkit
An unsupervised tool for measuring relative similarity between non-assembled genomic sequences
Hawk: a study tool for efficient compression of FASTQ files
A genomic compression algorithm that relies on a pre-analysis of the data (algorithmic entropy filter) before compression
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raw images
A lightweight C library for artificial neural networks
A fast and flexible FASTQ read filter for ancient DNA
Scripts used for extended analysis
LEGO +
Mapping and visualization of similar primer and adapter sequences