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amap-python

Automated mouse atlas propagation

arrayqueues

Multiprocessing queues for numpy arrays using shared memory

bouter

bouter.jl

Zebrafish behavioral analysis in Julia

brunoise

2-photon scanning software in Python

cellfinder

Automated 3D cell detection and registration of whole-brain images

clustering-pipeline

cookiecutter-portugueslab

Cookiecutter template for a Python package.

deepdish.jl

A simple package to load HDF5 files saved by the DeepDish python library in Julia

dragomir-et-al-2019-modelfit

Repository for the code accompanying the Dragmorir et al 2019. publication

dragomir-et-al-2019-protocols

ec-code

Code for the analysis of eurydendroid cells data

example_stytra_analysis

Example notebooks for analyzing data from a stytra experiment. Contains code for reproducing figures of stytra paper.

fimpy

flammkuchen

Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab

graph-analysis-michael

hackathon2021

Folder with the material of the Portugues lab hackaton 2021

hardware

Files for laser cutter and 3d printer

hdf5.jl

Saving and loading data in the HDF5 file format

jafari-et-al-2020

Code and sample data used for parts of the analysis in the paper Jafari et al 2020

knogler-et-al.-example-datasets

knogler_etal_2019_elife

MATLAB source code for Purkinje cell spike extraction and summary analyses

lars.jl

Least angle regression and the lasso covariance test

lightparam

Another attempt at parameters in Python

lobe_alignment

Code for lobe assignement from planewise volume image of the mushroom body

lotr

Motion integration analysis

lsmlsda2020

Repo for students of the class 'Large Scale Modelling and Large Scale Data Analysis'

makieaddons.jl

Utility functions for Makie plots

markov-et-al

Scripts for the Markov et al paper on motor adaptation

napari-hdf5