Name: Pontus Höjer
Type: User
Company: KTH - Royal Institute of Technology
Bio: PhD Student in Biotechnology working on the development of sequencing methods using droplet emulsions for multi-modal analysis
Location: Stockholm
🧬 I am a soon to be finishing PhD Student at KTH working with omics method development and linked read sequencing.
🐍 I build Snakemake pipelines such as BLR.
I also contribute to several open source Python tools such as:
More about me:
aquila
Diploid personal genome assembly and comprehensive variant detection based on linked-reads
awesome-linked-reads
Collection of tools and resources for linked-reads
bioconda-recipes
Conda recipes for the bioconda channel.
blr
checkconstruct
Check PCR constructs
clew
Handling of ChIB data
cluster_viewer
cue
Deep learning framework for SV calling and genotyping
dbs_analysis
ema
Fast & accurate alignment of barcoded short-reads
flyttdata
Flyttdata
genetech
material related to the genetech courses
hapcut2
software tools for haplotype assembly from sequence data
linkedsv
lrez
Standalone tool and library allowing to work with barcoded linked-reads
lupp
misc
Collection of useful scripts
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
multiqc_blr
multiqc_testdata
Test data for MultiQC. See https://github.com/ewels/MultiQC
naibr
Novel Adjacency Identification with Barcoded Reads
novel-x
Novel insertion detection with 10X reads
planets-phojer
Programming Formalisms course HT 2023
pontushojer
About me
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
rosalind
Rosalind problem solving
samplot
Plot structural variant signals from many BAMs and CRAMs
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
starcode
All pairs search and sequence clustering
thesis_scripts
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
