Name: Computational Biology @Pacific Northwest National Laboratory
Type: Organization
Bio: This site is for repositories for computational biology work performed at the Pacific Northwest National Laboratory, a Department of Energy National Laboratory.
Location: Richland, WA
Blog: https://www.pnnl.gov/computational-biology
Computational Biology @Pacific Northwest National Laboratory's Projects
Software Carpentry Workshop
Pathway-tools Omics Dashboard tutorial
Probabilistic Circuits in Julia
Open source code for AlphaFold.
Experiments in AML cell lines where we assess proteomics of single and double drug treatments.
accessible AutoML for deep learning.
azotobacter_vinelandii_dj
A Python implementation of global optimization with gaussian processes.
Analysis of BEAT AML patient proteomics data
Analysis of the 210 patient cohort processed by the OHSU/PNNL PTRC
Central place for the engineering/scaling WG: documentation, SLURM scripts and logs, compute environment and data.
Access to Biological Web Services from Python.
Simulation software for biochemical systems that use mass action kinetics based on maximum entropy production.
BoltzmannMFX is a biological simulation code that solves chemical reaction networks using maximum entropy methods. It uses modules from MFiX-Exa and is based on the AMReX framework for massively parallel block-structured adaptive mesh applications.
Git Repo for simulating Boolean Models
C++ library of Blazing Signature Filter
Python wrapper for Blazing Signature Filter
CLEAN: a contrastive learning model for high-quality functional prediction of proteins