pnnl-compbio Goto Github PK

2018-07-19-pnnl-swc

2018-08-22-pnnl-swc

Software Carpentry Workshop

2018-10-29-pnnl-swc

2019-03-26-omicsdashboard-tutorial

Pathway-tools Omics Dashboard tutorial

2019-03.14-15-pnnl-swc

2019-07.22-23-pnnl-swc

2019-11.21-22-pnnl-swc

2020-04.09-10-pnnl-swc

3d_scaffold

advancedprobabilisticcircuits.jl

Probabilistic Circuits in Julia

alphafold

Open source code for AlphaFold.

amecovdock

aml_sorted_proteomics

amldrugcombos

Experiments in AML cell lines where we assess proteomics of single and double drug treatments.

amlresistancenetworks

autokeras

accessible AutoML for deep learning.

avine-gem

azotobacter_vinelandii_dj

bayesian-inference

bayesianoptimization

A Python implementation of global optimization with gaussian processes.

beatamlpilotproteomics

Analysis of BEAT AML patient proteomics data

beatamlproteomics

Analysis of the 210 patient cohort processed by the OHSU/PNNL PTRC

bigscience

Central place for the engineering/scaling WG: documentation, SLURM scripts and logs, compute environment and data.

bioservices

Access to Biological Web Services from Python.

boltzmann

Simulation software for biochemical systems that use mass action kinetics based on maximum entropy production.

boltzmannmfx

BoltzmannMFX is a biological simulation code that solves chemical reaction networks using maximum entropy methods. It uses modules from MFiX-Exa and is based on the AMReX framework for massively parallel block-structured adaptive mesh applications.

boolode

Git Repo for simulating Boolean Models

bsf-jaccard-core

C++ library of Blazing Signature Filter

bsf-jaccard-py

Python wrapper for Blazing Signature Filter

chemprop-ir

clean

CLEAN: a contrastive learning model for high-quality functional prediction of proteins