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bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

clap

A full featured, fast Command Line Argument Parser for Rust

fastq-rs

hdf5-rs

HDF5 for Rust

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

jax-md

Differentiable, Hardware Accelerated, Molecular Dynamics

libdeflater

Rust wrapper for libdeflate 🗜️

ndarray-examples

A collection of examples leveraging the ndarray ecosystem.

plotly

Plotly for Rust

read-structure-examples

Example Read Structures for BAM <-> FASTQ

rust-bindgen

Automatically generates Rust FFI bindings to C (and some C++) libraries.

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

rust-intel-mkl

Redistribute Intel MKL as a crate

simdeez

easy simd

sprs

sparse linear algebra library for rust