plantandfoodresearch Goto Github PK

20-by-2020

Data analysis for a collaborative project with FAR aiming to improve wheat yields

alliummap

Curated public data about genetic markers and mapping in onion and related Allium vegetables

apsim.shared

apsim_docker

Dockerfile and helper files to build Apsim Classic in a Docker container

apsimtools

Scripts for doing stuff pre and post apsim simulation

apsimx

ApsimX is the next generation of APSIM

aspire-lite

Aspire Asparagus Android app written by Alastair Hughes

assemblathon2-analysis

collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

batchit

simple jobs submission via command-line for AWS batch

bioinf_apis_metabarcoding

bioinf_vitis_nicotiana_rnaseq

RNAseq differential expression experiment in N. benthamiana and Vitis vinifera

ckanext-pfr

Configuration and settings associated with PFR's CKAN instance

data-science-toolbox

Start doing data science in minutes

datasharing

The Leek group guide to data sharing

django-import-export

Copy of https://github.com/stj/django-import-export that works with django 1.8

docker-ckan

Docker Compose setup for CKAN

docker-netbox

Docker image for https://github.com/digitalocean/netbox

dplyr

Plyr specialised for data frames: faster & with remote datastores

edamontology

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

efp-browser

example-tetraploid-potato-vcf-prjna414303

Example tetraploid VCF from NCBI BioProject PRJNA414303

fodderbeatoats

Rainshelter rotation simulations

gbs_makefile_dev_afm

initial port of GBS scripts to makefiles

genometools

GenomeTools genome analysis system.

github-automation

Scripts and tools to automate github

government.github.com

Gather, curate, and feature stories of public servants and civic hackers using GitHub as part of their open government innovations

grapes_mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

hidecan

Package to create hidecan plots for GWAS and differential expression results

irods

Middleware for your critical data.

irrigationanimation

Tools for visualising spacial simulation data