Comments (6)
llstbg
commented on June 2, 2024
1
Thank you for your fast replays!
@juliusgarbe, I followed the build instructions as in https://pism-docs.org/sphinx/installation/pism.html, so my build directory is under pism-stable/build/. (As for pismr I only used pismr -eisII A -y 5000 -view thk,temppabase,velsurf_mag to test the installation)
@citibeth , Thanks for that. Indeed the problem was the wrong linked Petsc and PISM version. I re-installed with Spack, this time specifying a newer version which is working! I used spack install [email protected].
Now I am able to run PISM, however each connection ( SSH) needs spack load [email protected] in order to use PISM.
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juliusgarbe
commented on June 2, 2024
Hi @llstbg,
Just to make sure: Did you try running pismr with an input file (command line option -i) provided? Without an initial file to start from, PISM cannot run and will always throw an error (see here for more: https://www.pism.io/docs/manual/initialization/index.html)
Also, I think the "build" directory should most likely be created under pism-stable/pism/build/ (not pism-stable/build/). Did you check there?
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citibeth
commented on June 2, 2024
The Spack PISM receipe is probably out of date. Make sure you're getting the version of PISM you want to use, and it's linking to the correct version of PETSc. If you need to update the PISM recipe, please submit a PR with your updates.
At the end of the day, Spack goes through the sames steps you would do manually. These things get debugged by watching it do each step, and making sure it's doing the right thing.
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citibeth
commented on June 2, 2024
Use spack environments instead of spack load to set up a set of packages to
load for your work.
On Tue, Mar 15, 2022 at 04:57 llstbg ***@***.***> wrote:
Thank you for your fast replays!
@juliusgarbe <https://github.com/juliusgarbe>, I followed the build
instructions as in https://pism-docs.org/sphinx/installation/pism.html,
so my build directory is under pism-stable/build/. (As for pismr I only
used pismr -eisII A -y 5000 -view thk,temppabase,velsurf_mag to test the
installation)
@citibeth <https://github.com/citibeth> , Thanks for that. Indeed the
problem was the wrong linked Petsc and PISM version. I re-installed with
Spack, this time *specifying* a newer version which is working! I used spack
install ***@***.***
Now I am able to run PISM, however each connection ( SSH) needs spack
load ***@***.*** in order to use PISM.
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juliusgarbe
commented on June 2, 2024
Great, glad that it works now! (I was trying to infer the location of the build directory from your PETSc error message, as it is supposed to be in the same directory where the src folder is located, which in your case is /home/lielles/pism-stable/pism/src/. Anyhow... 😉)
Note that the pism-docs.org website is deprecated and might be outdated. The new website is https://www.pism.io.
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llstbg
commented on June 2, 2024
Thanks, I now use the (https://www.pism.io/) for everything (I haven't noticed there is a new documentation until you mentioned it!)
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Related Issues (20)
- bug in documentation of -surface elevation
- Can I use annual precipitation as input? HOT 1
- PICO: division by zero in some parallel runs HOT 6
- Incorrect minimum required PETSc version HOT 4
- Ensure that the minimum supported PETSc version listed in the manual is up to date HOT 1
- SSA run for a labgum shelf evolution HOT 1
- OpenMPI problem: PISM ERROR: Ice thickness exceeds the height of the computational box HOT 2
- using PISM with Newtonian fluids HOT 1
- When use PDD,it shows cannot convert 'mm day-1' to 'kg m-2 second-1' HOT 4
- warning "output variable bwatvel is not available" when bwatvel is not in requested list HOT 1
- Rename -extra_* and -ts_* to -spatial_* and -scalar_*, respectively HOT 1
- How can i use glacial index in atmospheric component？ HOT 3
- Incorrect uplift units in Beddef Given HOT 1
- PISM ERROR: stress balance computation failed. Model state was saved to '*_out_pism_stressbalance_failed.nc' HOT 2
- SSAFD KSP (linear solver) failed HOT 2
- Conservative regridding (averaging) for 2D fields HOT 1
- Put projection info into files HOT 1
- Building user manual with Sphinx >= 5.0 fails with 'language = None'
- Black-hole calving HOT 15
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