pinskylab Goto Github PK

a_clarkii_transcriptomics

scripts, data, and plots for Amphiprion clarkii transcriptomics project

adultpade

Code for population structure and locus-environmental associations for adult summer flounder

approx-bayes-comp-applications

arg_coral_reefs

Code to accompany Pinsky et al. 2023 Coral Reef Population Genomics in an Age of Global Change. Annual Review of Genetics

arms_climateshift

Data, analysis, and figure production to support Pinsky, Selden, and Kitchel 2020 Annual Review of Marine Science

atlantic_croaker_range

Data and code for the genomic analysis of Atlantic croaker (Micropogonias undulatus) and incorporation of genomic data into range projections of the species.

biscay_range_shifts

bsb-shift-drivers

camotesroms

Project calculating predicted dispersal using empirical oceanographic measurements and ROMS output for the Camotes Sea, Philippines.

carabid_movement

Analysis of carabid beetle movement data from Jördis Terlau

climate_community_crossrealm

Comparisons of community responses to temperature change across realms

climateandmsp

Test the benefits and costs of proactively preparing for climate change-driven species shifts.

clownfish

R package of functions for importing and wrangling clownfish data **Work in Progress**

clownfish-movement

Michelle's scripts to analyse clownfish movement

clownfish_data_analysis

Allison's (somewhat outdated) general clownfish data analysis

clownfish_persistence

Allison's clownfish metapopulation persistence analysis

clownfishgwas

Katrina Catalano's data and code for project investigating associations between larval traits and genotypes from Expressed Exome Capture Sequencing in Amphiprion percula.

clownfishr

R package to interact with Pinsky Lab clownfish data

codevol

Scripts for analysis of Atlantic cod genome sequences through time (Northeast Arctic and Canada)

codpolyevol

Code for evaluating polygenic selection in Atlantic cod

coral-restoration

Coral restoration project

db_backups

Backups of our Laboratory and Leyte databases

dispersalvariation

dynamic_range_model

dynamic range models and forecast methods

ebs_dissimilarity_time_sensitivity

Exploration of the effects of spatial and temporal scale on biotic homogenization using the Eastern Bering Sea as a test case. Zoë Kitchel dissertation chapter.

ecoevo_coral

Eco-evo models for coral adaptation to climate change

field

Scripts used in the field for the Clownfish project to import and double check data

fish_regression_abc

Regression approximate bayesian computation (RABC) algorithm for parameter estimation and inference in a size-structured population model.

foodweb

Matlab foodweb simulation in a spatial temperature gradient with temperature change over time

genomics

Wrangling of genomic data and identity analysis