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huidongchen avatar huidongchen commented on June 11, 2024

It looks like SnapATAC author has updated several functions. Unfortunately he did not keep records of different release versions. That's why even if you are using the same version, some functions are actually different already. So I guess it will be difficult to address this on my end.

If you simply want to validate the results shown in our paper, I can share with you the saved R image file. If you want to use SnapATAC tool, I think it would make more sense if you check out their github page and follow their latest tutorials.

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Van1yu3 avatar Van1yu3 commented on June 11, 2024

Thank you for your reply! Then I think I need to go to the SnapATAC GitHub page.

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